Deanna Auberry

Pacific Northwest National Laboratory
PO Box 999
Richland, WA 99352
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Selected Publications

Gilmore JM, DL Auberry, JL Sharp, AM White, KK Anderson, and DS Daly. 2008. "A Bayesian Estimator of Protein-Protein Association Probabilities ." Bioinformatics 24(13):1554-1555. doi:10.1093/bioinformatics/btn238
Pelletier DA, GB Hurst, LJ Foote, PK Lankford, CK McKeown, TYS Lu, DD Schmoyer, MB Shah, WJ Hervey IV, WH McDonald, BS Hooker, WR Cannon, DS Daly, JM Gilmore, HS Wiley, DL Auberry, Y Wang, F Larimer, SJ Kennel, MJ Doktycz, J Morrell-Falvey, ET Owens, and MV Buchanan. 2008. "A general system for studying protein-protein interactions in gram-negative bacteria." Journal of Proteome Research 7(8):3319-3328. doi:10.1021/pr8001832

Sharp JL, KK Anderson, DS Daly, DL Auberry, JJ Borkowski, and WR Cannon. 2007. "Inferring Protein Associations Using Protein Pulldown Assays." In 2006 Joint Statistical Meetings: Statistics for an Uncertain World: Meeting Global Challenges, August 6-10, Seattle, WA, p. 5 pages. American Statistical Association, Alexandria, VA.
Sharp JL, KK Anderson, GB Hurst, DS Daly, DA Pelletier, WR Cannon, DL Auberry, DD Schmoyer, WH McDonald, AM White, BS Hooker, KD Victry, MV Buchanan, V Kery, and HS Wiley. 2007. "Statistically Inferring Protein-Protein Asociations with Affinity Isolation LC-MS/MS Assays." Journal of Proteome Research 6(9):3788-3795. doi:10.1021/pr0701106
Taylor RC, M Singhal, DS Daly, KO Domico, AM White, DL Auberry, KJ Auberry, BS Hooker, GB Hurst, JE McDermott, WH McDonald, DA Pelletier, DD Schmoyer, and WR Cannon. 2007. "SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction ." In Sixth International Conference on Machine Learning and Applications, (ICMLA 2007) , pp. 587-593. IEEE Computer Society, Washington DC. doi:10.1109/ICMLA.2007.63

Lin CT, PA Moore, DL Auberry, EV Landorf , T Peppler , KD Victry, FR Collart, and V Kery. 2006. "Automated Purification of Recombinant Proteins: Combining High-throughput with High Yield." Protein expression and purification 47(1):16-24.

Ahram M, JN Adkins, DL Auberry, DS Wunschel, and DL Springer. 2005. "A Proteomic Approach to Characterize Protein Shedding." Proteomics 5(1):123-131. doi:10.1002/pmic.200400912
Markillie LM, CT Lin, JN Adkins, DL Auberry, EA Hill, BS Hooker, PA Moore, RJ Moore, L Shi, HS Wiley, and V Kery. 2005. "Simple Protein Complex Purification and Identification Method Suitable for High- throughput Mapping of Protein Interaction Networks." Journal of Proteome Research 4(2):268-274. doi:10.1021/pr049847a

Shen Y, RJ Moore, R Zhao, J Blonder, DL Auberry, CD Masselon, L Pasa-Tolic, KK Hixson, KJ Auberry, and RD Smith. 2003. "High-Efficiency On-Line Solid-Phase Extraction Coupling to 15-150 um I.D. Column Liquid Chromatography for Proteomic Analysis." Analytical Chemistry 75(14):3596-3605.
Springer DL, DL Auberry, M Ahram, JN Adkins, JM Feldhaus, JH Wahl, DM Wunsch, and KD Rodland. 2003. "Characterization of Plasma Membrane Proteins from Ovarian Cancer Cells Using Mass Spectrometry ." Disease Markers 19(4-5):219-228.

Lipton MS, L Pasa-Tolic, GA Anderson, DJ Anderson, DL Auberry, JR Battista, MJ Daly, JK Fredrickson, KK Hixson, HM Kostandarithes, CD Masselon, LM Markillie, RJ Moore, MF Romine, Y Shen, EF Strittmatter, N Tolic, HR Udseth, A Venkateswaran, KK Wong, R Zhao, and RD Smith. 2002. "Global Analysis of Deinococcus Radiodurans Proteome by Csing Accurate Mass Tags." Proceedings of the National Academy of Sciences of the United States of America 99(17):11049-11054.